Citation
Rajinder S., . and Low L. E. T., . and Cheah S. C., . and Chua B. H., . and Lee W. W., . (2005) Automated procedure in the development of ESTs derived microsatellite in oil palm Elaeis guineensis Jacq. [Proceedings Paper]
Abstract
Expressed sequence tag EST projects have generated vast amount of sequence data from plant species; these EST sequences provide a very good resource for gene discovery gene annotation and marker development. The objective of this study was to develop a systematic and automated bioinformatic-based tool for the development of EST-derived microsatellite SSRs markers from oil palm EST sequence database These SSRs are very useful molecular marker for functional diversity study in natural population or germplasm collections and construction of genetic map. EST-SSR markers are valuable because their development cost is inexpensive they represent transcribed genes and a putative function that often be inferred by homology search. They have been developed and mapped in several crop species and could prove useful for marker assisted selection in oil palm.
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Abstract
Expressed sequence tag EST projects have generated vast amount of sequence data from plant species; these EST sequences provide a very good resource for gene discovery gene annotation and marker development. The objective of this study was to develop a systematic and automated bioinformatic-based tool for the development of EST-derived microsatellite SSRs markers from oil palm EST sequence database These SSRs are very useful molecular marker for functional diversity study in natural population or germplasm collections and construction of genetic map. EST-SSR markers are valuable because their development cost is inexpensive they represent transcribed genes and a putative function that often be inferred by homology search. They have been developed and mapped in several crop species and could prove useful for marker assisted selection in oil palm.
Additional Metadata
| Item Type: | Proceedings Paper |
|---|---|
| AGROVOC Term: | Oil palm |
| AGROVOC Term: | Elaeis guineensis |
| AGROVOC Term: | Gene sequence |
| AGROVOC Term: | Automation |
| AGROVOC Term: | Bioinformatics |
| AGROVOC Term: | Microsatellites |
| AGROVOC Term: | Genetic markers |
| AGROVOC Term: | Molecular markers |
| AGROVOC Term: | Germplasm collections |
| Geographical Term: | MALAYSIA |
| Depositing User: | Ms. Suzila Mohamad Kasim |
| Last Modified: | 24 Apr 2025 05:16 |
| URI: | http://webagris.upm.edu.my/id/eprint/13818 |
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